miRBase entry: oha-mir-216

Stem-loop oha-mir-216


Accession
MI0031417
Description
Ophiophagus hannah oha-mir-216 precursor miRNA
Gene family
MIPF0000054; mir-216


Sequence

cauagauggcugugaauugguuUAAUCUCAGCUGGCAACUGUGAGcaguuaauaaauccucuCACAGUGGUAUCUGGGAUUAUacuaaacacagcaauuuccgugcu
(((.((..((((((..(((((.(((((((((.((.((.(((((((.((..........))))))))))).)).))))))))).))))).))))))....)).)))..

Structure
--   a  --ug      aa     u         C  G  A       c  uuaa 
  cau ga    gcugug  uuggu UAAUCUCAG UG CA CUGUGAG ag    u
  ||| ||    ||||||  ||||| ||||||||| || || ||||||| ||     
  gug cu    cgacac  aauca AUUAGGGUC AU GU GACACuc uc    a
uc   c  uuaa      -a     U         U  G  -       -  cuaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
AZIM01000377.1: 298835-298941 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from oha-mir-216
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oha-miR-216-5p

Accession MIMAT0036833
Description Ophiophagus hannah oha-miR-216-5p mature miRNA
Sequence 23 - UAAUCUCAGCUGGCAACUGUGAG - 45
Evidence not_experimental

Mature oha-miR-216-3p

Accession MIMAT0036834
Description Ophiophagus hannah oha-miR-216-3p mature miRNA
Sequence 63 - CACAGUGGUAUCUGGGAUUAU - 83
Evidence not_experimental

References

  1. PubMed ID: 24297900
    The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
    "Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
    "Proc Natl Acad Sci U S A (2013) 110:20651-20656