miRBase entry: oha-mir-215

Stem-loop oha-mir-215


Accession
MI0031416
Description
Ophiophagus hannah oha-mir-215 precursor miRNA
Gene family
MIPF0000063; mir-192


Sequence

aggguaAUGACCUAUGAUUUGACAGACUgugcuaucuaagucugcCUGUCAUUUCUGUAGGCCAAUAcucugcauguucacuacucuac
((((((.((.(((((((..((((((.(.(.(((.....)))).).))))))..)).))))).)).))))))..................

Structure
------------------      A  A     -  UU      A U u   a 
                  agggua UG CCUAU GA  UGACAG C g gcu u
                  |||||| || ||||| ||  |||||| | | ||| c
                  ucucAU AC GGAUG CU  ACUGUC g c uga u
caucucaucacuuguacg      A  C     U  UU      c u -   a 


Annotation confidence Not enough data
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Genome context
AZIM01001511.1: 634812-634900 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from oha-mir-215
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oha-miR-215-5p

Accession MIMAT0036831
Description Ophiophagus hannah oha-miR-215-5p mature miRNA
Sequence 7 - AUGACCUAUGAUUUGACAGACU - 28
Evidence not_experimental

Mature oha-miR-215-3p

Accession MIMAT0036832
Description Ophiophagus hannah oha-miR-215-3p mature miRNA
Sequence 46 - CUGUCAUUUCUGUAGGCCAAUA - 67
Evidence not_experimental

References

  1. PubMed ID: 24297900
    The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
    "Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
    "Proc Natl Acad Sci U S A (2013) 110:20651-20656