miRBase entry: oha-mir-200a

Stem-loop oha-mir-200a


Accession
MI0031401
Description
Ophiophagus hannah oha-mir-200a precursor miRNA
Gene family
MIPF0000019; mir-8


Sequence

gaucgugguccucuguggacaucuuacuagacagugcuggauuuugucaguguacucUAACACUGUCUGGUAACGAUGUUuaaagagugagccaaacu
.....(((((((((.(((((((((((((((((((((.((((..............)))).))))))))))))).)))))))).)))).)).)))....

Structure
gaucg   -  -    g        -             c    uuuugu 
     ugg uc cucu uggacauc uuacuagacagug ugga      c
     ||| || |||| |||||||| ||||||||||||| ||||       
     acc ag gaga auUUGUAG AAUGGUCUGUCAC AUcu      a
-ucaa   g  u    a        C             A    caugug 


Annotation confidence Not enough data
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Genome context
AZIM01000256.1: 133883-133980 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from oha-mir-200a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oha-miR-200a

Accession MIMAT0036807
Description Ophiophagus hannah oha-miR-200a mature miRNA
Sequence 58 - UAACACUGUCUGGUAACGAUGUU - 80
Evidence not_experimental

References

  1. PubMed ID: 24297900
    The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
    "Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
    "Proc Natl Acad Sci U S A (2013) 110:20651-20656