miRBase entry: oha-mir-20b

Stem-loop oha-mir-20b


Accession
MI0031400
Description
Ophiophagus hannah oha-mir-20b precursor miRNA
Gene family
MIPF0000001; mir-17


Sequence

uccuggcagggccAAAGUGCUCAUAGUGCAGGUAguuguggagccaaauucuACUGUAAUGUGGGCACUUCCAguccugcuggau
(((.((((((((..(((((((((((.(((((.(((...((....))....)))))))).)))))))))))...))))))))))).

Structure
-   u        -cA           G     G   -uug  g 
 ucc ggcagggc   AAGUGCUCAUA UGCAG UAg    ug a
 ||| ||||||||   ||||||||||| ||||| |||    ||  
 agg ucguccug   UUCACGGGUGU AUGUC Auc    ac g
u   -        ACC           A     -   uuaa  c 


Annotation confidence Not enough data
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Genome context
AZIM01002644.1: 179551-179635 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from oha-mir-20b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oha-miR-20b-5p

Accession MIMAT0036805
Description Ophiophagus hannah oha-miR-20b-5p mature miRNA
Sequence 14 - AAAGUGCUCAUAGUGCAGGUA - 34
Evidence not_experimental

Mature oha-miR-20b-3p

Accession MIMAT0036806
Description Ophiophagus hannah oha-miR-20b-3p mature miRNA
Sequence 53 - ACUGUAAUGUGGGCACUUCCA - 73
Evidence not_experimental

References

  1. PubMed ID: 24297900
    The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
    "Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
    "Proc Natl Acad Sci U S A (2013) 110:20651-20656