miRBase entry: oha-mir-1c

Stem-loop oha-mir-1c


Accession
MI0031398
Description
Ophiophagus hannah oha-mir-1c precursor miRNA
Gene family
MIPF0000038; mir-1


Sequence

ucacuccugccaaaaGUACAUACUUCUUUACAUUCCAuaauauuguauguucaUAUGGGUACAUAAAGAAGUAUGUgcucugggcagguuuu
.....((((((...((((((((((((((((...((((((....((......))))))))....))))))))))))))))...))))))....

Structure
ucacu      aaa                -CAU      auau  ua 
     ccugcc   aGUACAUACUUCUUUA    UCCAua    ug  u
     ||||||   ||||||||||||||||    ||||||    ||   
     ggacgg   ucgUGUAUGAAGAAAU    GGGUAU    ac  g
-uuuu      guc                ACAU      ----  uu 


Annotation confidence Not enough data
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Genome context
AZIM01001242.1: 204419-204510 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from oha-mir-1c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oha-miR-1c-5p

Accession MIMAT0036801
Description Ophiophagus hannah oha-miR-1c-5p mature miRNA
Sequence 16 - GUACAUACUUCUUUACAUUCCA - 37
Evidence not_experimental

Mature oha-miR-1c-3p

Accession MIMAT0036802
Description Ophiophagus hannah oha-miR-1c-3p mature miRNA
Sequence 54 - UAUGGGUACAUAAAGAAGUAUGU - 76
Evidence not_experimental

References

  1. PubMed ID: 24297900
    The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
    "Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
    "Proc Natl Acad Sci U S A (2013) 110:20651-20656