miRBase entry: oha-mir-199c

Stem-loop oha-mir-199c

Accession

MI0031394

Description

Ophiophagus hannah oha-mir-199c precursor miRNA

Gene family

MIPF0000040; mir-199

Sequence

ucaaccugcuccgucgcCCCAGUGUUCAGACUACCUGUUCaggacaaugcuguugUACAGUAGUCUGCACAUUGGUUagacugggcaagggaaugca
....(((((((.(((...(((((((.((((((((.(((....((((....))))..))))))))))).)))))))...))).)))).))).......

Structure

---ucaa   -    c   gcC       U        C   UCag    a 
       ccu gcuc guc   CCAGUGU CAGACUAC UGU    gaca u
       ||| |||| |||   ||||||| |||||||| |||    ||||  
       gga cggg cag   GGUUACA GUCUGAUG ACA    uugu g
acguaag   a    u   aUU       C        -   --Ug    c

Annotation confidence Not enough data

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Genome context

AZIM01005115.1: 134705-134801 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oha-mir-199c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oha-miR-199c-5p

Accession	MIMAT0036793
Description	Ophiophagus hannah oha-miR-199c-5p mature miRNA
Sequence	18 - CCCAGUGUUCAGACUACCUGUUC - 40
Evidence	not_experimental

Mature oha-miR-199c-3p

Accession	MIMAT0036794
Description	Ophiophagus hannah oha-miR-199c-3p mature miRNA
Sequence	56 - UACAGUAGUCUGCACAUUGGUU - 77
Evidence	not_experimental

References

PubMed ID: 24297900
The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
"Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
"Proc Natl Acad Sci U S A (2013) 110:20651-20656