miRBase entry: oha-mir-196c

Stem-loop oha-mir-196c


Accession
MI0031391
Description
Ophiophagus hannah oha-mir-196c precursor miRNA
Gene family
MIPF0000031; mir-196


Sequence

ugaaaacuggucggugauuUAGGUAGUUUCUCGUUGUUGAGgcugaacauuccucucUCUGCAGCACGAAACUGCCUUCAucaccucaguuuaua
...(((((((..((((((..((((((((((..(((((.((((..((....))..).))).)))))..))))))))))..)))))))))))))...

Structure
uga       uc      uU          UC     U   - cu  a 
   aaacugg  ggugau  AGGUAGUUUC  GUUGU GAG g  ga c
   |||||||  ||||||  ||||||||||  ||||| ||| |  ||  
   uuugacu  ccacuA  UCCGUCAAAG  CGACG CUc c  cu a
aua       --      CU          CA     U   u uc  u 


Annotation confidence Not enough data
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Genome context
AZIM01000260.1: 324589-324683 [+]

Database links

Mature oha-miR-196c-5p

Accession MIMAT0036787
Description Ophiophagus hannah oha-miR-196c-5p mature miRNA
Sequence 20 - UAGGUAGUUUCUCGUUGUUGAG - 41
Evidence not_experimental

Mature oha-miR-196c-3p

Accession MIMAT0036788
Description Ophiophagus hannah oha-miR-196c-3p mature miRNA
Sequence 58 - UCUGCAGCACGAAACUGCCUUCA - 80
Evidence not_experimental

References

  1. PubMed ID: 24297900
    The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
    "Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
    "Proc Natl Acad Sci U S A (2013) 110:20651-20656