Stem-loop oha-mir-133a-1

Accession

MI0031341

Description

Ophiophagus hannah oha-mir-133a-1 precursor miRNA

Gene family

MIPF0000029; mir-133

Sequence

cuuugcuuaAGCUGGUAAAAUGGAAUCAAAUcgcauguuuaauggaUUUGGUCCCCUUCAACCAGCUGuagcuaugu
....(((..(((((((..((.((.((((((((.(((.....))))))))))).)).))..)))))))..))).....

Structure

-cuuu   ua       AA  U  A        g   g 
     gcu  AGCUGGU  AA GG AUCAAAUc cau u
     |||  |||||||  || || |||||||| ||| u
     cga  UCGACCA  UU CC UGGUUUag gua u
uguau   uG       AC  C  C        -   a 

Annotation confidence Not enough data

Genome context

AZIM01001242.1: 200581-200657 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from oha-mir-133a-1

Mature oha-miR-133a-1-5p

• Accession: MIMAT0036698
• Description: Ophiophagus hannah oha-miR-133a-1-5p mature miRNA
• Sequence: 10 - AGCUGGUAAAAUGGAAUCAAAU - 31
• Evidence: not_experimental

Mature oha-miR-133a-3p

• Accession: MIMAT0036699
• Description: Ophiophagus hannah oha-miR-133a-3p mature miRNA
• Sequence: 47 - UUUGGUCCCCUUCAACCAGCUG - 68
• Evidence: not_experimental

References

1. PubMed ID: 24297900
   The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
   "Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
   "Proc Natl Acad Sci U S A (2013) 110:20651-20656