miRBase entry: oha-let-7f-2

Stem-loop oha-let-7f-2

Accession

MI0031307

Description

Ophiophagus hannah oha-let-7f-2 precursor miRNA

Gene family

MIPF0000002; let-7

Sequence

ucuuaucagguUGAGGUAGUAGAUUGUAUAGUUguaggguaguuauuuugcccucuucaggagauaaCUAUACAAUCUAUUGCCUUCCCugaggag
.(((.(((((..((((((((((((((((((((((((((((((.....))))))).........))))))))))))))))))))))).))))).)))

Structure

u   a     uU                       ---------       u 
 cuu ucagg  GAGGUAGUAGAUUGUAUAGUUgu         aggguag u
 ||| |||||  |||||||||||||||||||||||         ||||||| a
 gag aguCC  UUCCGUUAUCUAACAUAUCaaua         ucccguu u
-   g     -C                       gaggacuuc       u

Annotation confidence Not enough data

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Genome context

AZIM01001439.1: 260084-260179 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from oha-let-7f-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oha-let-7f-5p

Accession	MIMAT0036628
Description	Ophiophagus hannah oha-let-7f-5p mature miRNA
Sequence	12 - UGAGGUAGUAGAUUGUAUAGUU - 33
Evidence	not_experimental

Mature oha-let-7f-2-3p

Accession	MIMAT0036638
Description	Ophiophagus hannah oha-let-7f-2-3p mature miRNA
Sequence	68 - CUAUACAAUCUAUUGCCUUCCC - 89
Evidence	not_experimental

References

PubMed ID: 24297900
The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
"Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
"Proc Natl Acad Sci U S A (2013) 110:20651-20656