Stem-loop ppy-mir-518a-2

Accession

MI0031108

Description

Pongo pygmaeus ppy-mir-518a-2 precursor miRNA

Gene family

MIPF0000020; mir-515

Sequence

cuggagcaagaagaucucaugcugugacuCUGCAAAGGGAAGCCCUUUCugcugucuaaaagaaaaGAAAGCGCUUCCCUUUGGAGUGuuacgguuugagaaaagcagcguugaag
.....((.......(((((.((((((((.((.(((((((((((.((((((....(((...)))..)))))).))))))))))).)).)))))))).)))))......)).......

Structure

--cugga  aagaaga     u        u  G           C      gcug   a 
       gc       ucuca gcugugac CU CAAAGGGAAGC CUUUCu    ucu  
       ||       ||||| |||||||| || ||||||||||| ||||||    ||| a
       cg       agagu uggcauuG GA GUUUCCCUUCG GAAAGa    aga  
gaaguug  -acgaaa     u        U  G           C      --aa   a 

Annotation confidence Not enough data

Genome context

chr19: 55536834-55536949 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from ppy-mir-518a-2

Mature ppy-miR-518a-5p

• Accession: MIMAT0015951
• Description: Pongo pygmaeus ppy-miR-518a-5p mature miRNA
• Sequence: 30 - CUGCAAAGGGAAGCCCUUUC - 49
• Evidence: not_experimental

Mature ppy-miR-518a-3p

• Accession: MIMAT0015952
• Description: Pongo pygmaeus ppy-miR-518a-3p mature miRNA
• Sequence: 67 - GAAAGCGCUUCCCUUUGGAGUG - 88
• Evidence: not_experimental

References

1. PubMed ID: 24126940
   Exploration of miRNA families for hypotheses generation
   "Kamanu TK, Radovanovic A, Archer JA, Bajic VB"
   "Sci Rep (2013) 3:2940