Stem-loop ppy-mir-521-3

Accession

MI0031106

Description

Pongo pygmaeus ppy-mir-521-3 precursor miRNA

Gene family

MIPF0000020; mir-515

Sequence

cuggagcaagaagaucuuaugcugugacccuccaaagggaagaacuuucuguugucuaaaagaaaagAACGCACUUCCCUUUAGAGUGUuaccgugugagaaaagcaacguugaaguug
..............((((((((.(((((.(((.(((((((((..(.((((....(((...)))..)))).)..))))))))).))).))))).))))))))....((((......))))

Structure

----cuggagcaagaaga        u     c   c         aa u    guug   a 
                  ucuuaugc gugac cuc aaagggaag  c uucu    ucu  
                  |||||||| ||||| ||| |||||||||  | ||||    ||| a
                  agagugug cauUG GAG UUUCCCUUC  G AAga    aga  
guugaaguugcaacgaaa        c     U   A         AC C    --aa   a 

Annotation confidence Not enough data

Genome context

chr19: 55522703-55522821 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from ppy-mir-521-3

Mature ppy-miR-521

• Accession: MIMAT0015977
• Description: Pongo pygmaeus ppy-miR-521 mature miRNA
• Sequence: 68 - AACGCACUUCCCUUUAGAGUGU - 89
• Evidence: not_experimental

References

1. PubMed ID: 24126940
   Exploration of miRNA families for hypotheses generation
   "Kamanu TK, Radovanovic A, Archer JA, Bajic VB"
   "Sci Rep (2013) 3:2940