miRBase entry: ppy-mir-518e

Stem-loop ppy-mir-518e


Accession
MI0031104
Description
Pongo pygmaeus ppy-mir-518e precursor miRNA
Gene family
MIPF0000020; mir-515


Sequence

cuggagcaagaagaucucaugaugugacccCUCUAGAGGGAAGCACUUUCUGuuggcuaaaagaaaaagAAAGCGCUUCCCUUCAGAGUGuuacgcuuugagaaaagca
..............(((((...((((((..((((.(((((((((.((((((................)))))).))))))))).)))).))))))...)))))......

Structure
cuggagcaagaaga     uga      cc    A         A      Guuggcu 
              ucuca   ugugac  CUCU GAGGGAAGC CUUUCU       a
              |||||   ||||||  |||| ||||||||| ||||||        
              agagu   gcauuG  GAGA UUCCCUUCG GAAAga       a
--------acgaaa     uuc      -U    C         C      aaaagaa 


Annotation confidence Not enough data
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Genome context
chr19: 55504419-55504527 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from ppy-mir-518e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppy-miR-518e-5p

Accession MIMAT0036450
Description Pongo pygmaeus ppy-miR-518e-5p mature miRNA
Sequence 31 - CUCUAGAGGGAAGCACUUUCUG - 52
Evidence not_experimental

Mature ppy-miR-518e-3p

Accession MIMAT0036451
Description Pongo pygmaeus ppy-miR-518e-3p mature miRNA
Sequence 70 - AAAGCGCUUCCCUUCAGAGUG - 90
Evidence not_experimental

References

  1. PubMed ID: 24126940
    Exploration of miRNA families for hypotheses generation
    "Kamanu TK, Radovanovic A, Archer JA, Bajic VB"
    "Sci Rep (2013) 3:2940