Stem-loop sequence gma-MIR5670b

Accession

MI0031055 (change log)

Description

Glycine max miR5670b stem-loop

Gene family

MIPF0001978; MIR5670

Literature search

1 open access papers mention gma-MIR5670b
(3 sentences)

Stem-loop

   u    c      c              a          cau                     a             c              cuguaguuc  g 
5'  ucaa gaagca auguggugugaugu agggaaauac   gacugaauuuaguugaacccu uuaacaauauuca ugugaugcuugaca         cc u
    |||| |||||| |||||||||||||| ||||||||||   ||||||||||||||||||||| ||||||||||||| ||||||||||||||         ||  
3'  aguu cuucgu uauaccauacuaca ucccuuuaug   uugacuuaaaucaauuugggg gauuguuauaagu acacuacgaacugu         gg a
   -    a      u              c          auc                     a             -              --------a  a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Glycine_max_v2.0; GCA_000004515.3): chr2: 10713946-10714143 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0031055

Mature sequence gma-miR5670b

• Accession: MIMAT0036393
• Sequence: 172 - cacaucauaccauauuugcuuc - 193
• Evidence: experimental; Illumina [1]

References

1. PMID:24475082 "Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons" Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ PLoS One. 9:e86153(2014).