miRBase entry: ocu-mir-191

Stem-loop ocu-mir-191


Accession
MI0030998
Description
Oryctolagus cuniculus ocu-mir-191 precursor miRNA
Gene family
MIPF0000194; mir-191

Literature search
1 open access papers mention ocu-mir-191
(1 sentences)

Sequence

cggcuggacagcgggCAACGGAAUCCCAAAAGCAGCUGuugucuccagagcauuccaGCUGCGCUUGGAUUUCGUUCCCugcuuuccugccu
.(((.(((.((((((.((((((((((.((..(((((((.(((.......)))...)))))))..)))))))))))).)))))).))).))).

Structure
c   u   c      C          C  AA       --u   cu 
 ggc gga agcggg AACGGAAUCC AA  GCAGCUG   ugu  c
 ||| ||| |||||| |||||||||| ||  |||||||   |||  c
 ccg ccu ucguCC UUGCUUUAGG UU  CGUCGac   acg  a
u   u   u      C          -  CG       cuu   ag 


Annotation confidence Not enough data
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Genome context
CM000798.1: 16649737-16649828 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ocu-mir-191
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ocu-miR-191-5p

Accession MIMAT0036335
Description Oryctolagus cuniculus ocu-miR-191-5p mature miRNA
Sequence 16 - CAACGGAAUCCCAAAAGCAGCUG - 38
Evidence experimental
SOLiD [1], Illumina [2]

Mature ocu-miR-191-3p

Accession MIMAT0036336
Description Oryctolagus cuniculus ocu-miR-191-3p mature miRNA
Sequence 58 - GCUGCGCUUGGAUUUCGUUCCC - 79
Evidence experimental
SOLiD [1], Illumina [2]

References

  1. PubMed ID: 23426804
    Discovery of pluripotency-associated microRNAs in rabbit preimplantation embryos and embryonic stem-like cells
    "Maraghechi P, Hiripi L, Toth G, Bontovics B, Bosze Z, Gocza E"
    "Reproduction (2013) 145:421-437

  2. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344