miRBase entry: ocu-mir-302a

Stem-loop ocu-mir-302a


Accession
MI0030989
Description
Oryctolagus cuniculus ocu-mir-302a precursor miRNA
Gene family
MIPF0000071; mir-302

Literature search
1 open access papers mention ocu-mir-302a
(1 sentences)

Sequence

ccaccACUUAAACGUGGAUGUACUUGCUuugaaacuaaaaaagUAAGUGCUUCCAUGUUUUGGUGAugg
(((.((((.(((((((((.(((((((((((.........))))))))))).))))))))).)))).)))

Structure
   c    U         U           gaa 
cca cACU AAACGUGGA GUACUUGCUuu   a
||| |||| ||||||||| |||||||||||   c
ggu GUGG UUUGUACCU CGUGAAUgaaa   u
   A    U         U           aaa 


Annotation confidence Not enough data
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Genome context
CM000804.1: 36769946-36770014 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from ocu-mir-302a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ocu-miR-302a-5p

Accession MIMAT0036320
Description Oryctolagus cuniculus ocu-miR-302a-5p mature miRNA
Sequence 6 - ACUUAAACGUGGAUGUACUUGCU - 28
Evidence experimental
SOLiD [1], Illumina [2]

Mature ocu-miR-302a-3p

Accession MIMAT0036321
Description Oryctolagus cuniculus ocu-miR-302a-3p mature miRNA
Sequence 44 - UAAGUGCUUCCAUGUUUUGGUGA - 66
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 23426804
    Discovery of pluripotency-associated microRNAs in rabbit preimplantation embryos and embryonic stem-like cells
    "Maraghechi P, Hiripi L, Toth G, Bontovics B, Bosze Z, Gocza E"
    "Reproduction (2013) 145:421-437

  2. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344