miRBase entry: chi-mir-96

Stem-loop chi-mir-96


Accession
MI0030843
Description
Capra hircus chi-mir-96 precursor miRNA
Gene family
MIPF0000072; mir-96

Literature search
1 open access papers mention chi-mir-96
(1 sentences)

Sequence

ccacuaccaucugcuuggccgacUUUGGCACUAGCACAUUUUUGcuugugucucuccgcucugagcaaucaugugcagugccaauaugggaaaagcaggaugc
.......(((((((((..((.(..((((((((.((((((..(((((((((......)))...))))))..))))))))))))))..).))..))))).)))).

Structure
ccacuac    -     gg  g cU        A      UU      ---   uc 
       cauc ugcuu  cc a  UUGGCACU GCACAU  UUGcuu   gug  u
       |||| |||||  || |  |||||||| ||||||  ||||||   |||   
       guag acgaa  gg u  aaccguga cgugua  aacgag   cgc  c
------c    g     aa  g au        -      cu      ucu   cu 


Annotation confidence Not enough data
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Genome context
chr4: 96232297-96232399 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from chi-mir-96
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-96

Accession MIMAT0036309
Description Capra hircus chi-miR-96 mature miRNA
Sequence 24 - UUUGGCACUAGCACAUUUUUG - 44
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40