miRBase entry: chi-mir-660

Stem-loop chi-mir-660


Accession
MI0030828
Description
Capra hircus chi-mir-660 precursor miRNA
Gene family
MIPF0000113; mir-188

Literature search
1 open access papers mention chi-mir-660
(3 sentences)

Sequence

cugcuccuucucccgUACCCAUUGCAUAUCGGAGCUGUgaaugcucaaagcaccuccuaugugcauggauuacaggag
.........((((.(((.((((.((((((.((((.(((...........))).)))).))))))))))..))).))))

Structure
cugcuccuu    c   -C    U      C    C   gaau 
         cucc gUA  CCAU GCAUAU GGAG UGU    g
         |||| |||  |||| |||||| |||| |||    c
         gagg cau  ggua cgugua ccuc acg    u
---------    a   ua    -      u    c   aaac 


Annotation confidence Not enough data
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Genome context
chrX: 82601027-82601104 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from chi-mir-660
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-660

Accession MIMAT0036284
Description Capra hircus chi-miR-660 mature miRNA
Sequence 16 - UACCCAUUGCAUAUCGGAGCUGU - 38
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40