Stem-loop chi-mir-544

Accession

MI0030821

Description

Capra hircus chi-mir-544 precursor miRNA

Gene family

MIPF0000436; mir-544

Literature search

1 open access papers mention chi-mir-544
(2 sentences)

Sequence

ucagauuuucaucaccuagggaUCUUGUUAAAAGGCAGAUUCUgauucagggaccaagauucugcauuuuuagcaaguucccaagugaugcuaaugcuucu
..(((((..((((((...((((.((((((((((((((((.(((.............))).))))).))))))))))).))))..))))))..))).))...

Structure

-uc  -   uu      cua    U           -     U   gauuc 
   ag auu  caucac   ggga CUUGUUAAAAG GCAGA UCU     a
   || |||  ||||||   |||| ||||||||||| ||||| |||     g
   uc uaa  guagug   cccu gaacgauuuuu cgucu aga     g
ucu  g   uc      -aa    u           a     u   accag 

Annotation confidence Not enough data

Genome context

chr21: 67124523-67124623 [+]

Clustered miRNAs

14 other miRNAs are < 10 kb from chi-mir-544

Mature chi-miR-544-5p

• Accession: MIMAT0036276
• Description: Capra hircus chi-miR-544-5p mature miRNA
• Sequence: 23 - UCUUGUUAAAAGGCAGAUUCU - 43
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40