miRBase entry: chi-mir-494

Stem-loop chi-mir-494


Accession
MI0030808
Description
Capra hircus chi-mir-494 precursor miRNA
Gene family
MIPF0000018; mir-154

Literature search
3 open access papers mention chi-mir-494
(13 sentences)

Sequence

uuuuugaccagggcuuaucuucgauacuugaaggagagguuauccguguugucuucucuuuauuuaugaUGAAACAUACACGGGAAACCUCUuuuuuaguaucaaaucccacc
..........(((.........((((((.((((((((((((.((((((((((.(((((.........)).)))))).))))))).))))))))))))))))))....)))...

Structure
uuuuugacca   cuuaucuuc      u            a       -   c   -  uuu 
          ggg         gauacu gaaggagagguu uccgugu ugu uuc uc   a
          |||         |||||| |||||||||||| ||||||| ||| ||| ||   u
          ccc         cuauga uuuuuUCUCCAA GGGCACA ACA AAG ag   u
-------cca   -----uaaa      -            A       U   -   U  uau 


Annotation confidence Not enough data
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Genome context
chr21: 67108251-67108363 [+]
Clustered miRNAs
17 other miRNAs are < 10 kb from chi-mir-494
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-494

Accession MIMAT0036255
Description Capra hircus chi-miR-494 mature miRNA
Sequence 70 - UGAAACAUACACGGGAAACCUCU - 92
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40