miRBase entry: chi-mir-487b

Stem-loop chi-mir-487b


Accession
MI0030804
Description
Capra hircus chi-mir-487b precursor miRNA
Gene family
MIPF0000018; mir-154

Literature search
2 open access papers mention chi-mir-487b
(3 sentences)

Sequence

uuucuuucccgugCUAACCUUUGGUACUUGGAGAgugguuaucccuguccuguucguuuuacucaugucgAAUCGUACAGGGUCAUCCACUUuuucaguaucaagagcgcagaccgua
..........(((((....(((((((((.(((((((((....((((((.(.(((((............))))).).))))))....))))))))).))))))))))))))........

Structure
uuucuuuccc     AACC         U         uuau      c u     uuuua 
          gugCU    UUUGGUACU GGAGAgugg    cccugu c guucg     c
          |||||    ||||||||| |||||||||    |||||| | |||||      
          cgcga    gaacuauga uuuUUCACC    GGGACA G UAAgc     u
--augccaga     ----         c         UACU      U C     uguac 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr21: 67122099-67122216 [+]
Clustered miRNAs
15 other miRNAs are < 10 kb from chi-mir-487b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-487b-5p

Accession MIMAT0036248
Description Capra hircus chi-miR-487b-5p mature miRNA
Sequence 14 - CUAACCUUUGGUACUUGGAGA - 34
Evidence experimental
Illumina [1]

Mature chi-miR-487b-3p

Accession MIMAT0036249
Description Capra hircus chi-miR-487b-3p mature miRNA
Sequence 71 - AAUCGUACAGGGUCAUCCACUU - 92
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40