Stem-loop chi-mir-410

Accession

MI0030783

Description

Capra hircus chi-mir-410 precursor miRNA

Gene family

MIPF0000018; mir-154

Sequence

caccugcggucuguggaguaggCGCCACUUUGGGUACUUGAGGAGagguugucugugaugaguucgcuuuauuaaugacgAAUAUAACACAGAUGGCCUGUuuucaguaccacccaccccucgug
.....((((...((((.((.............((((((.(((((.((((((((((((.((.((((((.........).))))).)).)))))))))))).)))))))))))))))))...)))).

Structure

caccu    ucu    a  aggCGCCACUUUG      U     G            a  a     - uuu 
     gcgg   gugg gu             GGUACU GAGGA agguugucugug ug guucg c   a
     ||||   |||| ||             |||||| ||||| |||||||||||| || ||||| |   u
     ugcu   cacc ca             ccauga cuuuU UCCGGUAGACAC AU UAAgc g   u
----g    ccc    -  -------------      -     G            A  A     a uaa 

Annotation confidence Not enough data

Genome context

chr21: 67143473-67143597 [+]

Clustered miRNAs

8 other miRNAs are < 10 kb from chi-mir-410

Mature chi-miR-410-5p

• Accession: MIMAT0036211
• Description: Capra hircus chi-miR-410-5p mature miRNA
• Sequence: 23 - CGCCACUUUGGGUACUUGAGGAG - 45
• Evidence: experimental ; Illumina [1]

Mature chi-miR-410-3p

• Accession: MIMAT0036212
• Description: Capra hircus chi-miR-410-3p mature miRNA
• Sequence: 81 - AAUAUAACACAGAUGGCCUGU - 101
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40