Stem-loop sequence chi-mir-409

Accession

MI0030782 (change log)

Description

Capra hircus miR-409 stem-loop

Gene family

MIPF0000018; mir-154

Literature search

2 open access papers mention chi-mir-409
(15 sentences)

Stem-loop

   -------------------ccucucca      g  gg   a    ac         -    - auc 
5'                            ugguac cg  gag gguu  ccgagcaac uuug c   u
                              |||||| ||  ||| ||||  ||||||||| |||| |    
3'                            acuaug gc  uuc ccaa  ggcucguug aagc g   g
   gagggucuaccggagagacuaccuaaa      -  uu   c    gu         u    a cag 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (CHIR_2.0; GCA_000317765.2): chr21: 67142870-67142983 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from chi-mir-409

• chi-mir-485: chr21: 67131798-67131912 [+]
• chi-mir-485: chr21: 67133472-67133586 [+]
• chi-mir-154a: chr21: 67137564-67137668 [+]
• chi-mir-154b: chr21: 67137892-67138000 [+]
• chi-mir-496: chr21: 67138399-67138519 [+]
• chi-mir-377: chr21: 67139994-67140124 [+]
• chi-mir-409: chr21: 67142870-67142983 [+]
• chi-mir-412: chr21: 67142997-67143118 [+]
• chi-mir-369: chr21: 67143159-67143265 [+]
• chi-mir-410: chr21: 67143473-67143597 [+]
• chi-mir-323b: chr21: 67144000-67144109 [+]

Database links

• miRBase Tracker:MI0030782

Mature sequence chi-miR-409-5p

• Accession: MIMAT0036209
• Sequence: 23 - agguuacccgagcaacuuugcau - 45
• Evidence: experimental; Illumina [1]

Mature sequence chi-miR-409-3p

• Accession: MIMAT0036210
• Sequence: 55 - gaauguugcucggugaacccc - 75
• Evidence: experimental; Illumina [1]

References

1. PMID:23981187 "Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing" Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J Reprod Domest Anim. 49:32-40(2014).