Stem-loop chi-mir-379

Accession

MI0030774

Description

Capra hircus chi-mir-379 precursor miRNA

Gene family

MIPF0000126; mir-379

Literature search

4 open access papers mention chi-mir-379
(13 sentences)

Sequence

ccugauucuggggucagcaccacuccacgguuccugcagagaUGGUAGACUAUGGAACGUAGGcugugugauuucugaccUAUGUAACAUGGUCCACUAACucucaguauccaauccguccucggagggc
.((((((....))))))..((.((((((((...(((.((((.((((.(((((((..((((((((.(........).).)))))))..))))))).)))).)))))))........))))....)))))).

Structure

ccugauucuggggucagca  a    ----    -----uuc   c    a    A       GA       - u ugu 
                   cc cucc    acgg        cug agag UGGU GACUAUG  ACGUAGG c g   g
                   || ||||    ||||        ||| |||| |||| |||||||  ||||||| | |    
                   gg gagg    ugcc        gac ucuC AUCA CUGGUAC  UGUAUcc g c   a
------------------c  -    cucc    uaaccuau   -    A    C       AA       a u uuu 

Annotation confidence Not enough data

Genome context

chr21: 67100421-67100550 [+]

Clustered miRNAs

9 other miRNAs are < 10 kb from chi-mir-379

Mature chi-miR-379-5p

• Accession: MIMAT0036195
• Description: Capra hircus chi-miR-379-5p mature miRNA
• Sequence: 43 - UGGUAGACUAUGGAACGUAGG - 63
• Evidence: experimental ; Illumina [1]

Mature chi-miR-379-3p

• Accession: MIMAT0036196
• Description: Capra hircus chi-miR-379-3p mature miRNA
• Sequence: 81 - UAUGUAACAUGGUCCACUAAC - 101
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40