Stem-loop chi-mir-377

Accession

MI0030772

Description

Capra hircus chi-mir-377 precursor miRNA

Gene family

MIPF0000018; mir-154

Sequence

aagagguaucuuggugcucaggcccugcugacauuugauccuugagcagagguugcccuuggugaauucgcuuuauuuauguugAAUCACACAAAGGCAACUUUUGuuugaguaucaaauccugcuuggga
....(((((....)))))....(((.((....(((((((.(((((((((((((((((.(((((((.(((((.........).)))))))).))).))))))))))))))))).)))))))...))..))).

Structure

aagagguaucuuggugcucagg   -u  ugac       c                 c   -    a    - uuu 
                      ccc  gc    auuugau cuugagcagagguugcc uug guga uucg c   a
                      |||  ||    ||||||| ||||||||||||||||| ||| |||| |||| |   u
                      ggg  cg    uaaacua gaguuuGUUUUCAACGG AAC CACU AAgu g   u
---------------------a   uu  -ucc       u                 A   A    -    u uau 

Annotation confidence Not enough data

Genome context

chr21: 67139994-67140124 [+]

Clustered miRNAs

11 other miRNAs are < 10 kb from chi-mir-377

Mature chi-miR-377

• Accession: MIMAT0036192
• Description: Capra hircus chi-miR-377 mature miRNA
• Sequence: 85 - AAUCACACAAAGGCAACUUUUG - 106
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40