miRBase entry: chi-mir-374b

Stem-loop chi-mir-374b


Accession
MI0030766
Description
Capra hircus chi-mir-374b precursor miRNA
Gene family
MIPF0000288; mir-374

Literature search
1 open access papers mention chi-mir-374b
(1 sentences)

Sequence

gaagaaauccuacucggauggAUAUAAUACAACCUGCUAAGUGuccuagcaCUUAUCAGGUUGUAUUAUCAUUguccgugucuauggcucucgucuaccagacucuaaauucc
((((..((...((.(((((((..(((((((((((((.(((((((....))))))).)))))))))))))..))))))).))..))..)).))((((...))))..........

Structure
---------------------  -  aa  ccu  u       AU             C       c 
                     ga ag  au   ac cggaugg  AUAAUACAACCUG UAAGUGu c
                     || ||  ||   || |||||||  ||||||||||||| |||||||  
                     cu uc  ua   ug gccugUU  UAUUAUGUUGGAC AUUCacg u
ccuuaaaucucagaccaucug  c  gg  -uc  u       AC             U       a 


Annotation confidence Not enough data
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Genome context
chrX: 72776625-72776737 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from chi-mir-374b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-374b-5p

Accession MIMAT0036182
Description Capra hircus chi-miR-374b-5p mature miRNA
Sequence 22 - AUAUAAUACAACCUGCUAAGUG - 43
Evidence experimental
Illumina [1]

Mature chi-miR-374b-3p

Accession MIMAT0036183
Description Capra hircus chi-miR-374b-3p mature miRNA
Sequence 52 - CUUAUCAGGUUGUAUUAUCAUU - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40