miRBase entry: chi-mir-34c

Stem-loop chi-mir-34c


Accession
MI0030759
Description
Capra hircus chi-mir-34c precursor miRNA
Gene family
MIPF0000039; mir-34

Literature search
5 open access papers mention chi-mir-34c
(8 sentences)

Sequence

ugagucuaguuacuAGGCAGUGUAGUUAGCUGAUUGCuaauaauaccAAUCACUAACCACACGGCCAGGuaaaaagauuugggaauucauccaaaugagcug
.((((((..(((((.(((.((((.(((((.((((((.((....)).))))))))))).)))).))).)))))..)))))).(((.....)))..........

Structure
---------------------u      ag     A   A    A     C      C  a 
                      gagucu  uuacu GGC GUGU GUUAG UGAUUG ua u
                      ||||||  ||||| ||| |||| ||||| |||||| ||  
                      uuuaga  aauGG CCG CACA CAAUC ACUAAc au a
gucgaguaaaccuacuuaaggg      aa     A   G    C     -      c  a 


Annotation confidence Not enough data
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Genome context
chr15: 21773345-21773446 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from chi-mir-34c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-34c-5p

Accession MIMAT0036169
Description Capra hircus chi-miR-34c-5p mature miRNA
Sequence 15 - AGGCAGUGUAGUUAGCUGAUUGC - 37
Evidence experimental
Illumina [1]

Mature chi-miR-34c-3p

Accession MIMAT0036170
Description Capra hircus chi-miR-34c-3p mature miRNA
Sequence 48 - AAUCACUAACCACACGGCCAGG - 69
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40