miRBase entry: chi-mir-323b

Stem-loop chi-mir-323b


Accession
MI0030739
Description
Capra hircus chi-mir-323b precursor miRNA
Gene family
MIPF0000018; mir-154

Literature search
1 open access papers mention chi-mir-323b
(1 sentences)

Sequence

gcgugcugcugcacuugaugcuugaggagagguugcccguggcccguucgcauucuucaugucgCACAAUACACGGUCGGCCUCUcuucgguaucaaaucccaccuugca
..((((....))))((((((((.((((((((((((.(((((....((.(((((.....))).)).))....))))).)))))))))))))))))))).............

Structure
gcgugcugcugcac        u            c     gccc  u  -   u 
              uugaugcu gaggagagguug ccgug    gu cg cau c
              |||||||| |||||||||||| |||||    || || ||| u
              aacuaugg cuucUCUCCGGC GGCAC    CA gc gua u
-acguuccacccua        -            U     AUAA  C  u   c 


Annotation confidence Not enough data
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Genome context
chr21: 67144000-67144109 [+]
Clustered miRNAs
8 other miRNAs are < 10 kb from chi-mir-323b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-323b

Accession MIMAT0036134
Description Capra hircus chi-miR-323b mature miRNA
Sequence 65 - CACAAUACACGGUCGGCCUCU - 85
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40