Stem-loop sequence chi-mir-30a

Accession

MI0030731 (change log)

Description

Capra hircus miR-30a stem-loop

Gene family

MIPF0000005; mir-30

Literature search

8 open access papers mention chi-mir-30a
(14 sentences)

Stem-loop

   uc   -------   a    g                 uc           ---g  ag 
5'   ccu       gug cagu agcggcuguaaacaucc  gacuggaagcu    ug  g
     |||       ||| |||| |||||||||||||||||  |||||||||||    ||   
3'   gga       cgc guca ucgucgacguuuguagg  cugacuuucgg    ac  c
   -a   cugcacc   c    g                 --           aaag  gu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (CHIR_2.0; GCA_000317765.2): chr14: 2517238-2517344 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0030731

Mature sequence chi-miR-30a-5p

• Accession: MIMAT0036121
• Sequence: 21 - uguaaacauccucgacuggaagcu - 44
• Evidence: experimental; Illumina [1]

Mature sequence chi-miR-30a-3p

• Accession: MIMAT0036122
• Sequence: 62 - cuuucagucggauguuugcag - 82
• Evidence: experimental; Illumina [1]

References

1. PMID:23981187 "Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing" Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J Reprod Domest Anim. 49:32-40(2014).