Stem-loop sequence chi-mir-200a

Accession

MI0030679 (change log)

Description

Capra hircus miR-200a stem-loop

Gene family

MIPF0000019; mir-8

Literature search

12 open access papers mention chi-mir-200a
(20 sentences)

Stem-loop

   --   - c   g        -             c    u  cuc 
5'   ggg c ucu uggacauc uuaccggacagug ugga uu   a
     ||| | ||| |||||||| ||||||||||||| |||| ||    
3'   ccc g gga acuuguag aauggucugucac aucu aa   g
   ca   a u   a        c             a    c  cuc 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (CHIR_2.0; GCA_000317765.2): AJPT02077529.1: 1264-1351 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from chi-mir-200a

• chi-mir-200a: AJPT02077529.1: 1264-1351 [-]
• chi-mir-429: AJPT02077529.1: 34-117 [-]

Database links

• miRBase Tracker:MI0030679

Mature sequence chi-miR-200a

• Accession: MIMAT0036045
• Sequence: 52 - uaacacugucugguaacgaug - 72
• Evidence: experimental; Illumina [1]

References

1. PMID:23981187 "Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing" Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J Reprod Domest Anim. 49:32-40(2014).