Stem-loop chi-mir-18a

Accession

MI0030660

Description

Capra hircus chi-mir-18a precursor miRNA

Gene family

MIPF0000001; mir-17

Literature search

1 open access papers mention chi-mir-18a
(1 sentences)

Sequence

gcuuuuuguucUAAGGUGCAUCUAGUGCAGAUAGugaaguagauuagcaucuACUGCCCUAAGUGCUCCUUCUGGcauaagaaguuaug
(((((((((.((((((.((((.(((.((((.(((((..(.....)..)).))))))).))).)))).)))..))).)))))))))....

Structure

----         u   --   U    C   U    A   -  aa u 
    gcuuuuugu cUA  AGG GCAU UAG GCAG UAG ug  g a
    ||||||||| |||  ||| |||| ||| |||| ||| ||  | g
    ugaagaaua GGU  UCC CGUG AUC CGUC Auc ac  u a
guau         c   CU   U    A   C    -   u  ga u 

Annotation confidence Not enough data

Genome context

chr12: 66729611-66729699 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from chi-mir-18a

Mature chi-miR-18a-5p

• Accession: MIMAT0036015
• Description: Capra hircus chi-miR-18a-5p mature miRNA
• Sequence: 12 - UAAGGUGCAUCUAGUGCAGAUAG - 34
• Evidence: experimental ; Illumina [1]

Mature chi-miR-18a-3p

• Accession: MIMAT0036016
• Description: Capra hircus chi-miR-18a-3p mature miRNA
• Sequence: 53 - ACUGCCCUAAGUGCUCCUUCUGG - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40