Stem-loop chi-mir-181c

Accession

MI0030651

Description

Capra hircus chi-mir-181c precursor miRNA

Gene family

MIPF0000007; mir-181

Literature search

3 open access papers mention chi-mir-181c
(6 sentences)

Sequence

caaggguuugggggAACAUUCAACCUGUCGGUGAGuuugggcagcucaggcaaACCAUCGACCGUUGAGUGGACCccgaggccuggaacugcc
...((((((.((((..((((((((..(((((((.(((((...........)))))))))))).))))))))..)))).)))))).........

Structure

------caa      g    AA        CU       A     ggca 
         ggguuu gggg  CAUUCAAC  GUCGGUG Guuug    g
         |||||| ||||  ||||||||  ||||||| |||||    c
         uccgga ccCC  GUGAGUUG  CAGCUAC CAaac    u
ccgucaagg      g    AG        -C       -     ggac 

Annotation confidence Not enough data

Genome context

chr7: 10034232-10034324 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-mir-181c

Mature chi-miR-181c-5p

• Accession: MIMAT0036003
• Description: Capra hircus chi-miR-181c-5p mature miRNA
• Sequence: 15 - AACAUUCAACCUGUCGGUGAG - 35
• Evidence: experimental ; Illumina [1]

Mature chi-miR-181c-3p

• Accession: MIMAT0036004
• Description: Capra hircus chi-miR-181c-3p mature miRNA
• Sequence: 54 - ACCAUCGACCGUUGAGUGGACC - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40