miRBase entry: chi-mir-17

Stem-loop chi-mir-17


Accession
MI0030648
Description
Capra hircus chi-mir-17 precursor miRNA
Gene family
MIPF0000001; mir-17

Literature search
6 open access papers mention chi-mir-17
(6 sentences)

Sequence

gucagaauaauguCAAAGUGCUUACAGUGCAGGUAGUgauuugugcaucuACUGCAGUGAAGGCACUUGUAGCAuuauggugac
((((..(((((((..((((((((.((.(((((.(((((.......)).)))))))).)).))))))))...)))))))..))))

Structure
    ga       -CA        A  G     G   -  au 
guca  auaaugu   AAGUGCUU CA UGCAG UAG Ug  u
||||  |||||||   |||||||| || ||||| ||| ||  u
cagu  uauuACG   UUCACGGA GU ACGUC Auc ac  g
    gg       AUG        A  G     -   u  gu 


Annotation confidence Not enough data
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Genome context
chr12: 66729474-66729557 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from chi-mir-17
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-17-5p

Accession MIMAT0035998
Description Capra hircus chi-miR-17-5p mature miRNA
Sequence 14 - CAAAGUGCUUACAGUGCAGGUAGU - 37
Evidence experimental
Illumina [1]

Mature chi-miR-17-3p

Accession MIMAT0035999
Description Capra hircus chi-miR-17-3p mature miRNA
Sequence 51 - ACUGCAGUGAAGGCACUUGUAGCA - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40