Stem-loop sequence chi-mir-16b

Accession

MI0030647 (change log)

Description

Capra hircus miR-16b stem-loop

Gene family

MIPF0000006; mir-15

Literature search

7 open access papers mention chi-mir-16b
(14 sentences)

Stem-loop

   cugacaua     uc    cu         ua        --gg     aa 
5'         cuugu  cgcu  agcagcacg  aauauugg    uagua  a
           |||||  ||||  |||||||||  ||||||||    |||||  u
3'         ggaca  gcga  ucgucgugu  uuauaacc    auuau  a
   ------ag     gu    uu         ua        acaa     aa 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (CHIR_2.0; GCA_000317765.2): chr1: 109436307-109436403 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from chi-mir-16b

• chi-mir-15b: chr1: 109436450-109436547 [-]
• chi-mir-16b: chr1: 109436307-109436403 [-]

Database links

• miRBase Tracker:MI0030647

Mature sequence chi-miR-16b-5p

• Accession: MIMAT0035996
• Sequence: 21 - uagcagcacguaaauauugggg - 42
• Evidence: experimental; Illumina [1]

Mature sequence chi-miR-16b-3p

• Accession: MIMAT0035997
• Sequence: 63 - accaauauuauugugcugcuuu - 84
• Evidence: experimental; Illumina [1]

References

1. PMID:23981187 "Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing" Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J Reprod Domest Anim. 49:32-40(2014).