Stem-loop sequence chi-mir-15a

Accession

MI0030644 (change log)

Description

Capra hircus miR-15a stem-loop

Gene family

MIPF0000006; mir-15

Literature search

5 open access papers mention chi-mir-15a
(56 sentences)

Stem-loop

   ----------a     gaguaaa ua        ua          ga  u 
5'            ccuug       g  gcagcaca  augguuugug  uu u
              |||||       |  ||||||||  ||||||||||  || g
3'            ggaac       c  cgucgugu  uaccggacgu  aa a
   cuucuagucua     auaaaaa uc        ua          gg  a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (CHIR_2.0; GCA_000317765.2): chr12: 18725978-18726072 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from chi-mir-15a

• chi-mir-15a: chr12: 18725978-18726072 [-]
• chi-mir-16a: chr12: 18725843-18725931 [-]

Database links

• miRBase Tracker:MI0030644

Mature sequence chi-miR-15a-5p

• Accession: MIMAT0035990
• Sequence: 15 - uagcagcacauaaugguuugugg - 37
• Evidence: experimental; Illumina [1]

Mature sequence chi-miR-15a-3p

• Accession: MIMAT0035991
• Sequence: 52 - caggccauauugugcugccuca - 73
• Evidence: experimental; Illumina [1]

References

1. PMID:23981187 "Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing" Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J Reprod Domest Anim. 49:32-40(2014).