miRBase entry: chi-mir-144

Stem-loop chi-mir-144


Accession
MI0030630
Description
Capra hircus chi-mir-144 precursor miRNA
Gene family
MIPF0000093; mir-144

Literature search
2 open access papers mention chi-mir-144
(2 sentences)

Sequence

gggcccugacUGGGAUAUCAUCAUAUACUGUaaguuugcgaugagauacUACAGUAUAGAUGAUGUACucguccgggugcucccagcucuggagcc
..((((.(((.(((((((((((.(((((((((.((((......))))..))))))))))))))))).)))))).))))(((((.......))))).

Structure
----------------gg    u   U   -        A         -a    gc 
                  gccc gac GGG AUAUCAUC UAUACUGUa  guuu  g
                  |||| ||| ||| |||||||| |||||||||  ||||   
                  uggg cug cuC UGUAGUAG AUAUGACAU  uaga  a
ccgaggucucgacccucg    c   -   A        -         ca    gu 


Annotation confidence Not enough data
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Genome context
chr19: 20538924-20539019 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from chi-mir-144
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-144-5p

Accession MIMAT0035965
Description Capra hircus chi-miR-144-5p mature miRNA
Sequence 11 - UGGGAUAUCAUCAUAUACUGU - 31
Evidence experimental
Illumina [1]

Mature chi-miR-144-3p

Accession MIMAT0035966
Description Capra hircus chi-miR-144-3p mature miRNA
Sequence 50 - UACAGUAUAGAUGAUGUAC - 68
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40