miRBase entry: chi-mir-1185

Stem-loop chi-mir-1185


Accession
MI0030598
Description
Capra hircus chi-mir-1185 precursor miRNA
Gene family
MIPF0000018; mir-154


Sequence

agcugcccuuugguacuugaagAGAGGAUACCCUUUGUAUGUucacuuuauuaacggcgaAUAUACAGAGGGAGACUCUUAUuugcguaucaaacucugacugggaaggcgc
.(((.(((((((((((.(((((((((..(.((((((((((((((.((........)).)))))))))))))))..))))).)))).))))))))........)))..)))..

Structure
-a   -g   --------        u    -     GA A              a  uua 
  gcu  ccc        uuugguac ugaa gAGAG  U CCCUUUGUAUGUuc cu   u
  |||  |||        |||||||| |||| |||||  | |||||||||||||| ||    
  cgg  ggg        aaacuaug guuU UUCUC  A GGGAGACAUAUAag gg   u
cg   aa   ucagucuc        c    A     AG -              c  caa 


Annotation confidence Not enough data
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Genome context
chr21: 67119939-67120050 [+]
Clustered miRNAs
14 other miRNAs are < 10 kb from chi-mir-1185
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-1185-5p

Accession MIMAT0035915
Description Capra hircus chi-miR-1185-5p mature miRNA
Sequence 23 - AGAGGAUACCCUUUGUAUGU - 42
Evidence experimental
Illumina [1]

Mature chi-miR-1185-3p

Accession MIMAT0035916
Description Capra hircus chi-miR-1185-3p mature miRNA
Sequence 61 - AUAUACAGAGGGAGACUCUUAU - 82
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40