Stem-loop chi-mir-10b

Accession

MI0030597

Description

Capra hircus chi-mir-10b precursor miRNA

Gene family

MIPF0000033; mir-10

Literature search

8 open access papers mention chi-mir-10b
(29 sentences)

Sequence

caguaacguugucuauauaUACCCUGUAGAACCGAAUUUGUgugguauccucguagucACAGAUUCGAUUCUAGGGGAAUauauggucgaugcaaaaacuucac
......(((((.((((((((.((((.(((((.((((((((((.(.(((....))).))))))))))).))))))))).)))))))).)))))............

Structure

------caguaa     u        A    G     C          u g   c 
            cguug cuauauaU CCCU UAGAA CGAAUUUGUg g uau c
            ||||| |||||||| |||| ||||| |||||||||| | |||  
            guagc gguauaUA GGGG AUCUU GCUUAGACAc u aug u
cacuucaaaaac     u        A    -     A          - g   c 

Annotation confidence Not enough data

Genome context

chr2: 21871351-21871454 [-]

Mature chi-miR-10b-5p

• Accession: MIMAT0035913
• Description: Capra hircus chi-miR-10b-5p mature miRNA
• Sequence: 20 - UACCCUGUAGAACCGAAUUUGU - 41
• Evidence: experimental ; Illumina [1]

Mature chi-miR-10b-3p

• Accession: MIMAT0035914
• Description: Capra hircus chi-miR-10b-3p mature miRNA
• Sequence: 59 - ACAGAUUCGAUUCUAGGGGAAU - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40