miRBase entry: chi-mir-105b

Stem-loop chi-mir-105b


Accession
MI0030592
Description
Capra hircus chi-mir-105b precursor miRNA
Gene family
MIPF0000074; mir-105


Sequence

ugugcaucguggUCAAAUGCUCAGACUCCUUGGUGgcugcuuacgcaCCACGGAUGUUUGAGCAUGUGCuauggugucua
...(((((((((.((.(((((((((((((.(((((..........))))).))).)))))))))).)))))))))))...

Structure
ugu         U  A          -   U     gcug 
   gcaucgugg CA AUGCUCAGAC UCC UGGUG    c
   ||||||||| || |||||||||| ||| |||||     
   ugugguauC GU UACGAGUUUG AGG ACCac    u
auc         -  G          U   C     gcau 


Annotation confidence Not enough data
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Genome context
chrX: 56905922-56906001 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from chi-mir-105b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-105b-5p

Accession MIMAT0035904
Description Capra hircus chi-miR-105b-5p mature miRNA
Sequence 13 - UCAAAUGCUCAGACUCCUUGGUG - 35
Evidence experimental
Illumina [1]

Mature chi-miR-105b-3p

Accession MIMAT0035905
Description Capra hircus chi-miR-105b-3p mature miRNA
Sequence 48 - CCACGGAUGUUUGAGCAUGUGC - 69
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40