Stem-loop sequence chi-let-7c

Accession

MI0030581 (change log)

Description

Capra hircus let-7c stem-loop

Gene family

MIPF0000002; let-7

Literature search

16 open access papers mention chi-let-7c
(43 sentences)

Stem-loop

   -gaa   ---      a      uu   g   u             ua  g ua a 
5'     gcu   gugugc uccggg  gag uag agguuguaugguu  ga u  c c
       |||   |||||| ||||||  ||| ||| |||||||||||||  || |  | c
3'     cga   cacacg agguuc  uuc auc uccaacaugucaa  uu a  g c
   cuac   guu      -      cu   g   u             --  g gg u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (CHIR_2.0; GCA_000317765.2): chr1: 20809702-20809809 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from chi-let-7c

• chi-mir-99a: chr1: 20810454-20810534 [-]
• chi-let-7c: chr1: 20809702-20809809 [-]

Database links

• miRBase Tracker:MI0030581

Mature sequence chi-let-7c-5p

• Accession: MIMAT0035884
• Sequence: 21 - ugagguaguagguuguaugguu - 42
• Evidence: experimental; Illumina [1]

Mature sequence chi-let-7c-3p

• Accession: MIMAT0035885
• Sequence: 66 - cuguacaaccuucuagcuuucc - 87
• Evidence: experimental; Illumina [1]

References

1. PMID:23981187 "Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing" Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J Reprod Domest Anim. 49:32-40(2014).