miRBase entry: chi-let-7a

Stem-loop chi-let-7a


Accession
MI0030579
Description
Capra hircus chi-let-7a precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
17 open access papers mention chi-let-7a
(52 sentences)

Sequence

agacugacggcccuuuggggUGAGGUAGUAGGUUGUAUAGUUuggggcucugcccugcuaugggauaaCUAUACAAUCUACUGUCUUUCCugaaguggcuguaaua
......((((((((((((((.(((((((((((((((((((((((((((...)))))).........))))))))))))))))))))))))))))).))))))....

Structure
agacug      -        U                     ---------      u 
      acggcc cuuugggg GAGGUAGUAGGUUGUAUAGUU         uggggc  
      |||||| |||||||| |||||||||||||||||||||         |||||| c
      ugucgg gaaguCCU UUCUGUCAUCUAACAUAUCaa         gucccg  
--auaa      u        -                     uaggguauc      u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr5: 118521992-118522097 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from chi-let-7a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-let-7a-5p

Accession MIMAT0035880
Description Capra hircus chi-let-7a-5p mature miRNA
Sequence 21 - UGAGGUAGUAGGUUGUAUAGUU - 42
Evidence experimental
Illumina [1]

Mature chi-let-7a-3p

Accession MIMAT0035881
Description Capra hircus chi-let-7a-3p mature miRNA
Sequence 69 - CUAUACAAUCUACUGUCUUUCC - 90
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40