Stem-loop sequence chi-let-7a

Accession

MI0030579 (change log)

Description

Capra hircus let-7a stem-loop

Gene family

MIPF0000002; let-7

Literature search

17 open access papers mention chi-let-7a
(47 sentences)

Stem-loop

   agacug      -   ug   u   gu                ---------        
5'       acggcc cuu  ggg gag  aguagguuguauaguu         uggggcu 
         |||||| |||  ||| |||  ||||||||||||||||         |||||| c
3'       ugucgg gaa  ccu uuc  ucaucuaacauaucaa         gucccgu 
   --auaa      u   gu   -   ug                uaggguauc        

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (CHIR_2.0; GCA_000317765.2): chr5: 118521992-118522097 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from chi-let-7a

• chi-let-7a: chr5: 118521992-118522097 [+]
• chi-let-7b: chr5: 118522775-118522871 [+]

Database links

• miRBase Tracker:MI0030579

Mature sequence chi-let-7a-5p

• Accession: MIMAT0035880
• Sequence: 21 - ugagguaguagguuguauaguu - 42
• Evidence: experimental; Illumina [1]

Mature sequence chi-let-7a-3p

• Accession: MIMAT0035881
• Sequence: 69 - cuauacaaucuacugucuuucc - 90
• Evidence: experimental; Illumina [1]

References

1. PMID:23981187 "Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing" Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J Reprod Domest Anim. 49:32-40(2014).