Stem-loop sequence tae-MIR9666b

Accession

MI0030421 (change log)

Description

Triticum aestivum miR9666b stem-loop

Gene family

MIPF0001930; MIR9666

Literature search

2 open access papers mention tae-MIR9666b
(4 sentences)

Stem-loop

   u  u    au            -           ca    au      a 
5'  ca ucgg  ucgccaucauac guccaaccgug  uuug  augcau u
    || ||||  |||||||||||| |||||||||||  ||||  ||||||  
3'  gu agcc  agcgguaguaug cggguuggcac  gagc  uacgua a
   g  u    au            u           -c    ac      u 

Deep sequencing

131089 reads, 522 reads per million, 116 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates: 2A: 251249264-251249361 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0030421

Mature sequence tae-miR9666b-5p

• Accession: MIMAT0035812
• Sequence: 13 - gccaucauacguccaaccgug - 33
• Deep sequencing: 1130 reads, 116 experiments
• Evidence: experimental; Illumina [1]

Mature sequence tae-miR9666b-3p

• Accession: MIMAT0035813
• Sequence: 67 - cgguugggcuguaugauggcga - 88
• Deep sequencing: 129426 reads, 116 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:24734873 "Identification and characterization of microRNAs in the flag leaf and developing seed of wheat (Triticum aestivum L.)" Han R, Jian C, Lv J, Yan Y, Chi Q, Li Z, Wang Q, Zhang J, Liu X, Zhao H BMC Genomics. 15:289(2014).