Stem-loop sequence tae-MIR7757

Accession

MI0030410 (change log)

Description

Triticum aestivum miR7757 stem-loop

Gene family

MIPF0002033; MIR7757

Literature search

2 open access papers mention tae-MIR7757
(2 sentences)

Stem-loop

   ug     cau          c          cuc      a cc  -u  cu       uugaaaca                 aauauccuugaacauaagaacgagccacacaugcugcaccaauacuaugaaaaguagcauagaaugaguaaaagaggcucuugacuuuuaga 
5'   cauua   auaaaaccuu agcuauccau   cauauc g  ug  cu  cuuaauu        uuuuggaaauaugcuua                                                                                            u
     |||||   |||||||||| ||||||||||   |||||| |  ||  ||  |||||||        |||||||||||||||||                                                                                             
3'   guaau   uauuuuggag uugauaggua   guauag c  ac  ga  gaauuag        aagauuuuuguaugaau                                                                                            c
   ua     auu          u          aau      - uu  uc  ac       --------                 cuguauuauugauuaguauaucuauucuuccgucuaauuucgacgaucaucaaucauuuuuucccaaauggacaucuaguuucgagaacgua 

Deep sequencing

1252544 reads, 5.71e+03 reads per million, 116 experiments

Confidence

Annotation confidence: low

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Genome context

• Coordinates: 3D: 111891336-111891679 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0030410

Mature sequence tae-miR7757-5p

• Accession: MIMAT0035800
• Sequence: 11 - auaaaaccuucagcuauccauc - 32
• Deep sequencing: 1224273 reads, 116 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:24734873 "Identification and characterization of microRNAs in the flag leaf and developing seed of wheat (Triticum aestivum L.)" Han R, Jian C, Lv J, Yan Y, Chi Q, Li Z, Wang Q, Zhang J, Liu X, Zhao H BMC Genomics. 15:289(2014).