Stem-loop sequence tae-MIR397

Accession

MI0030405 (change log)

Description

Triticum aestivum miR397 stem-loop

Gene family

MIPF0000120; MIR397

Literature search

12 open access papers mention tae-MIR397
(33 sentences)

Stem-loop

   c   a  g  c     a           a       -   -ua   c 
5'  gca ag ug cauug gugcagcguug ugaaccg ucc   cuc u
    ||| || || ||||| ||||||||||| ||||||| |||   |||  
3'  cgu uc gc guaac cacgucgcggc acuuggc agg   gag c
   -   c  g  a     a           c       g   ccg   c 

Deep sequencing

82162 reads, 273 reads per million, 116 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates: 6A: 120354266-120354358 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0030405

Mature sequence tae-miR397-5p

• Accession: MIMAT0035795
• Sequence: 63 - ucaccggcgcugcacacaaug - 83
• Deep sequencing: 17152 reads, 116 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:24734873 "Identification and characterization of microRNAs in the flag leaf and developing seed of wheat (Triticum aestivum L.)" Han R, Jian C, Lv J, Yan Y, Chi Q, Li Z, Wang Q, Zhang J, Liu X, Zhao H BMC Genomics. 15:289(2014).