Stem-loop sequence tae-MIR167c

Accession

MI0030399 (change log)

Description

Triticum aestivum miR167c stem-loop

Gene family

MIPF0000023; MIR167_1

Literature search

28 open access papers mention tae-MIR167c
(122 sentences)

Stem-loop

   c  -   c    -        c         c           cucauccagcaugcgccgaaaccgcguucgg 
5'  cu uug uggu gugagaga ugaagcugc agcaugaucug                               u
    || ||| |||| |||||||| ||||||||| |||||||||||                                
3'  ga aac accg cacucuuu acuucgacg ucguacuagac                               u
   a  c   c    g        u         -           uaccucguuuuuaagguucuauuggggcgcg 

Deep sequencing

1392853 reads, 6.51e+03 reads per million, 116 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates: 6D: 53810988-53811134 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0030399

Mature sequence tae-miR167c-5p

• Accession: MIMAT0035789
• Sequence: 21 - ugaagcugccagcaugaucugc - 42
• Deep sequencing: 1299649 reads, 116 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:24734873 "Identification and characterization of microRNAs in the flag leaf and developing seed of wheat (Triticum aestivum L.)" Han R, Jian C, Lv J, Yan Y, Chi Q, Li Z, Wang Q, Zhang J, Liu X, Zhao H BMC Genomics. 15:289(2014).