Stem-loop sequence tae-MIR1122c

Accession

MI0030398 (change log)

Description

Triticum aestivum miR1122c stem-loop

Gene family

MIPF0000443; MIR1120

Literature search

8 open access papers mention tae-MIR1122c
(40 sentences)

Stem-loop

   g  a            a           a              a     
5'  ug acuacucucucc ucccauaaugu agacguuuuugcaa cuau 
    || |||||||||||| ||||||||||| |||||||||||||| ||| a
3'  ac ugaugagggagg aggguauuaua ucugcaaaaacguu gauu 
   -  a            c           a              c     

Deep sequencing

91396 reads, 20.7 reads per million, 116 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates: 3D: 86881594-86881689 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0030398

Mature sequence tae-miR1122c-3p

• Accession: MIMAT0035788
• Sequence: 66 - ucuaauauuaugggacggagg - 86
• Deep sequencing: 77447 reads, 116 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:24734873 "Identification and characterization of microRNAs in the flag leaf and developing seed of wheat (Triticum aestivum L.)" Han R, Jian C, Lv J, Yan Y, Chi Q, Li Z, Wang Q, Zhang J, Liu X, Zhao H BMC Genomics. 15:289(2014).