Stem-loop sequence tae-MIR2275

Accession

MI0030387 (change log)

Description

Triticum aestivum miR2275 stem-loop

Gene family

MIPF0000797; MIR2275

Literature search

2 open access papers mention tae-MIR2275
(27 sentences)

Stem-loop

   --aauuuu     a    uu    -       u gg          acc   g g      --             c     u            -ua   c  acacugaguguuagcuacaacaagugauaguu 
5'         ggcag ugaa  ugag uguugga g  accaaaucuu   gcc g uguggc  aagauuugguuuc uccaa aucuuauguuca   ugu ag                                g
           ||||| ||||  |||| ||||||| |  ||||||||||   ||| | ||||||  ||||||||||||| ||||| ||||||||||||   ||| ||                                 
3'         cuguc acuu  gcuc auaaccu c  ugguuuagaa   cgg u auaucg  uucuaaaccaagg agguu uagaguguaagu   acg uc                                g
   aguagucc     a    cu    u       c uu          -ca   - g      ac             u     -            cga   c  caaaccaagaacucuguccggguccacaggua 

Deep sequencing

331 reads, 0 reads per million, 107 experiments

Confidence

Annotation confidence: not enough data

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Database links

• miRBase Tracker:MI0030387

Mature sequence tae-miR2275-3p

• Accession: MIMAT0035777
• Sequence: 224 - uuugguuuccuccaauaucucg - 245
• Deep sequencing: 7 reads, 6 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:24734873 "Identification and characterization of microRNAs in the flag leaf and developing seed of wheat (Triticum aestivum L.)" Han R, Jian C, Lv J, Yan Y, Chi Q, Li Z, Wang Q, Zhang J, Liu X, Zhao H BMC Genomics. 15:289(2014).