Stem-loop sequence tae-MIR396

Accession

MI0030381 (change log)

Description

Triticum aestivum miR396 stem-loop

Literature search

21 open access papers mention tae-MIR396
(60 sentences)

Stem-loop

   -                g   uc          ggauu  cu   uugu    c 
5'  ggcuuucuugaacugu aac  gcggggaugg     cc  gga    ggcg u
    |||||||||||||||| |||  ||||||||||     ||  |||    ||||  
3'  ccgaaagaacuuggua uug  cgccucugcc     gg  ucu    ccgu c
   c                g   uc          -----  cu   -cuu    c 

Deep sequencing

21124 reads, 19 reads per million, 116 experiments

Confidence

Annotation confidence: not enough data

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Database links

• miRBase Tracker:MI0030381

Mature sequence tae-miR396-5p

• Accession: MIMAT0035771
• Sequence: 11 - aacugugaacucgcggggaug - 31
• Deep sequencing: 17754 reads, 116 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:24734873 "Identification and characterization of microRNAs in the flag leaf and developing seed of wheat (Triticum aestivum L.)" Han R, Jian C, Lv J, Yan Y, Chi Q, Li Z, Wang Q, Zhang J, Liu X, Zhao H BMC Genomics. 15:289(2014).