Stem-loop sequence rno-mir-450b-1

Accession

MI0030362 (change log)

Description

Rattus norvegicus miR-450b-1 stem-loop

Gene family

MIPF0000128; mir-450

Stem-loop

          uuu     u            ug ac 
5' gaacuau   ugcga guguuccuaaua  u  u
   |||||||   ||||| ||||||||||||  |  a
3' cuuggua   acgcu cgcagggguuau  g  u
          cuu     u            gu ag 

Deep sequencing

537342 reads, 363 reads per million, 494 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chrX: 158153254-158153322 [+]
• Overlapping transcripts:

  sense

  ENSRNOT00000070944 ; exon 1

Clustered miRNAs

< 10kb from rno-mir-450b-1

• rno-mir-322-1: chrX: 158148161-158148255 [+]
• rno-mir-503-1: chrX: 158148476-158148546 [+]
• rno-mir-351-1: chrX: 158149206-158149286 [+]
• rno-mir-542-1: chrX: 158152146-158152224 [+]
• rno-mir-450b-1: chrX: 158153254-158153322 [+]
• rno-mir-450a: chrX: 158153377-158153467 [+]
• rno-mir-542-2: chrX: 158158885-158158963 [+]

Database links

• miRBase Tracker:MI0030362

Mature sequence rno-miR-450b-5p

• Accession: MIMAT0035746
• Sequence: 8 - uuuugcgauguguuccuaaua - 28
• Deep sequencing: 1069018 reads, 494 experiments
• Evidence: experimental; RNAseq-metaanalysis [1]

Mature sequence rno-miR-450b-3p

• Accession: MIMAT0035747
• Sequence: 43 - auuggggacgcuucgcauuca - 63
• Deep sequencing: 5666 reads, 313 experiments
• Evidence: experimental; RNAseq-metaanalysis [1]

References

1. PMID:23329697 "Rat mir-155 generated from the lncRNA Bic is 'hidden' in the alternate genomic assembly and reveals the existence of novel mammalian miRNAs and clusters" Uva P, Da Sacco L, Del Corno M, Baldassarre A, Sestili P, Orsini M, Palma A, Gessani S, Masotti A RNA. 19:365-379(2013).