Stem-loop sequence rno-mir-3084a-3

Accession

MI0030361 (change log)

Description

Rattus norvegicus miR-3084a-3 stem-loop

Gene family

MIPF0001536; mir-3084

Literature search

1 open access papers mention rno-mir-3084a-3
(6 sentences)

Stem-loop

   caaaua  -g     uua   a       a    c 
5'       gu  gaagg   auu gcagagu acug a
         ||  |||||   ||| ||||||| ||||  
3'       ca  cuucc   uga cgucuua ugau u
   -aaaaa  ga     -cc   c       a    a 

Deep sequencing

3577 reads, 0 reads per million, 354 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr7: 66663841-66663909 [-]
• Overlapping transcripts:

  antisense

  ENSRNOT00000031191 ; Usp15-201; intron 7

Database links

• miRBase Tracker:MI0030361

Mature sequence rno-miR-3084a-3p

• Accession: MIMAT0035740
• Sequence: 44 - uucugccaguccccuucagaca - 65
• Deep sequencing: 10322 reads, 348 experiments
• Evidence: experimental; RNAseq-metaanalysis [1]

Mature sequence rno-miR-3084d

• Accession: MIMAT0035745
• Sequence: 44 - uucugccaguccccuucagaca - 65
• Deep sequencing: 3441 reads, 348 experiments
• Evidence: experimental; RNAseq-metaanalysis [1]
• Predicted targets:
  • TargetScanVert:rno-miR-3084d
  • miRDB:rno-miR-3084d

References

1. PMID:23329697 "Rat mir-155 generated from the lncRNA Bic is 'hidden' in the alternate genomic assembly and reveals the existence of novel mammalian miRNAs and clusters" Uva P, Da Sacco L, Del Corno M, Baldassarre A, Sestili P, Orsini M, Palma A, Gessani S, Masotti A RNA. 19:365-379(2013).