Stem-loop sequence rno-mir-1843b

Accession

MI0030353 (change log)

Description

Rattus norvegicus miR-1843b stem-loop

Gene family

MIPF0001119; mir-1843

Literature search

6 open access papers mention rno-mir-1843b
(15 sentences)

Stem-loop

   aac       -ucu u   u       gau 
5'    auggagg    c guc gacuuag   a
      |||||||    | ||| |||||||   g
3'    uaccucc    g uag cugaauc   c
   aca       ccuu c   u       ggu 

Deep sequencing

160126 reads, 55.1 reads per million, 497 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr13: 77065446-77065507 [+]
• Overlapping transcripts:

  sense

  ENSRNOT00000075296 ; exon 1

  ENSRNOT00000040505 ; Rfwd2-201; intron 11

Database links

• miRBase Tracker:MI0030353

Mature sequence rno-miR-1843b-5p

• Accession: MIMAT0035730
• Sequence: 4 - auggaggucucugucugacuuag - 26
• Deep sequencing: 154552 reads, 497 experiments
• Evidence: experimental; RNAseq-metaanalysis [1]
• Predicted targets:
  • TargetScanVert:rno-miR-1843b-5p
  • miRDB:rno-miR-1843b-5p

Mature sequence rno-miR-1843b-3p

• Accession: MIMAT0035731
• Sequence: 41 - ucugaucguuccccuccauac - 61
• Deep sequencing: 5563 reads, 415 experiments
• Evidence: experimental; RNAseq-metaanalysis [1]
• Predicted targets:
  • TargetScanVert:rno-miR-1843b-3p
  • miRDB:rno-miR-1843b-3p

References

1. PMID:23329697 "Rat mir-155 generated from the lncRNA Bic is 'hidden' in the alternate genomic assembly and reveals the existence of novel mammalian miRNAs and clusters" Uva P, Da Sacco L, Del Corno M, Baldassarre A, Sestili P, Orsini M, Palma A, Gessani S, Masotti A RNA. 19:365-379(2013).